PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 900468
Common NameARALYDRAFT_900468
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 328aa    MW: 37308.7 Da    PI: 8.2361
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
900468genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.7e-19177227256
     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
              y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++ + kl+ge
  900468 177 LYRGVRQRH-WGKWVAEIRKPRN---RTRLWLGTFDTAEEAAMAYDREAFKLRGE 227
             59******9.**********954...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.25E-34176236No hitNo description
SuperFamilySSF541711.57E-23177235IPR016177DNA-binding domain
SMARTSM003802.8E-41177240IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-32177235IPR001471AP2/ERF domain
PROSITE profilePS5103223.235177234IPR001471AP2/ERF domain
PRINTSPR003672.5E-11178189IPR001471AP2/ERF domain
PfamPF008474.2E-14178227IPR001471AP2/ERF domain
PRINTSPR003672.5E-11200216IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MATAKNKGKS IRSLGTNESE KMDEEFQFSS GKYKDSGSGS DMWLGEASST SQRGLRKTRT  60
FDRHNPYLLQ PPPTTKCPVS SSSVAFPFSL APAIQNQQRF LHPNDPSGQR QQQMISFGPQ  120
LQVQPYLVQQ QQHMLQYWRD ILKLSPSGRM MMMNMLRQES DLPLTRPPIQ PFSATKLYRG  180
VRQRHWGKWV AEIRKPRNRT RLWLGTFDTA EEAAMAYDRE AFKLRGETAR LNFPELFLNK  240
QESTPVHQKQ CETATTSEEA SGRREDDSSA ALAVGRVSEE TGWAEAWFNA IPEEWGPGSP  300
LWDDYHFPIS NHKDDHDPPQ NSSSDTI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-20176234160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
3gcc_A5e-20176234463ATERF1
2gcc_A5e-20176234463ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0062340.0AC006234.4 Arabidopsis thaliana chromosome 2 clone F5H14 map mi148, complete sequence.
GenBankAY0628430.0AY062843.1 Arabidopsis thaliana AP2 domain transcription factor (At2g20880; F5H14.15) mRNA, complete cds.
GenBankAY0816590.0AY081659.1 Arabidopsis thaliana AP2 domain transcription factor (At2g20880) mRNA, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002884229.10.0hypothetical protein ARALYDRAFT_900468
SwissprotQ9SKT10.0ERF53_ARATH; Ethylene-responsive transcription factor ERF053
TrEMBLD7L5C00.0D7L5C0_ARALL; Putative uncharacterized protein
STRINGscaffold_304438.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21412775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.11e-173ERF family protein